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Bulajic, D. and Cristforetti, G. and Corsi, M. and Hidalgo, M. and Legnaioli, S. and Palleschi, V. and Salvetti, A. and Tognoni, E. and Green, S. and Bates, D. and Steiger-Garção, Adolfo and Fonseca, José and Martins, J. and McKay, J. and Tozer, B. and Wells, D. and Wells, R. and Harith, M. (2002) Diagnostics of high-temperature steel pipes in industrial environment by laser-induced breakdown spectroscopy technique: the LIBSGRAIN project. Spectrochimica Acta Part B: Atomic Spectroscopy, 57 (7), pp. 1181-1192. ISSN 0584-8547. (ISI Web of Science, Citations: 24).

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Etchells, Terence A. and Fernandes, Ana S. and Jarman, Ian H. and Fonseca, José M. and Lisboa, Paulo J. G. (2008) Stratification of Severity of Illness Indices: A Case Study for Breast Cancer Prognosis. [Paper]. In: 12th International Conference on Knowledge-Based Intelligent Information and Engineering Systems, SEP 03-05, 2008, Zagreb, Croatia. URL: http://dx.doi.org/10.1007/978-3-540-85565-1_27. (ISI Web of Science, Citations: 5).

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Fernandes, Ana S. and Jarman, Ian H. and Etchells, Terence A. and Fonseca, José M. and Biganzoli, Elia and Bajdik, Chris and Lisboa, Paulo J. G. (2008) Missing Data Imputation in Longitudinal Cohort Studies: Application of PLANN-ARD in Breast Cancer Survival. [Paper]. In: 2008 Seventh International Conference on Machine Learning and Applications, 11-13 Dec. 2008, San Diego, CA. URL: http://dx.doi.org/10.1109/ICMLA.2008.106. (ISI Web of Science, Citations: 4).

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Almeida, P. L. and Kundu, S. and Beja, D. and Fonseca, José M. and Figueirinhas, J. L. and Godinho, M. H. (2009) Deformation of isotropic and anisotropic liquid droplets dispersed in a cellulose liquid crystalline derivative. Cellulose, 16 (3), pp. 427-434. ISSN 0969-0239. eISSN 1572-882X. URL: http://dx.doi.org/10.1007/s10570-008-9273-x. (ISI Web of Science, Citations: 3).

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Fernandes, Ana S. and Jarman, Ian H. and Etchells, Terence A. and Fonseca, José M. and Biganzoli, Elia and Bajdik, Chris and Lisboa, Paulo J. G. (2009) Stratification Methodologies for Neural Networks Models of Survival. [Paper]. In: 10th International Work-Conference on Artificial Neural Networks, IWANN 2009, June 10-12, 2009, Salamanca, Spain. URL: http://dx.doi.org/10.1007/978-3-642-02478-8_124. (ISI Web of Science, Citations: 1).

DeOliveira, E and Fonseca, JM and SteigerGarcao, A (1997) MACIV: A DAI based resource management system. International Journal on Applied AI, 11 (6), pp. 525-550. ISSN 0883-9514. (ISI Web of Science, Citations: 1).

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Mora, A. and Vieira, P. and Fonseca, José (2010) Advances in Image Processing Techniques for Drusens Detection and Quantification in Fundus Images. [Paper]. In: Doctoral Conference on Computing, Electrical and Industrial Systems - DoCEIS'10, 22-24 February 2010, Caparica, Lisbon - Portugal. URL: http://dx.doi.org/10.1007/978-3-642-11628-5_32. (ISI Web of Science).

Lisboa, Paulo J. G. and Fernandes, Ana S. and Fonseca, José M. and Bajdik, Chris and Biganzoli, Elia (2010) Assessment of benefit vs. risk of drug therapy: The potential for outcome analysis with flexible models. [Paper]. In: The 2010 International Joint Conference on Neural Networks (IJCNN), 18-23 July 2010, Barcelona. URL: http://dx.doi.org/10.1109/IJCNN.2010.5596689. (ISI Web of Science).

Fernandes, Ana S. and Alves, Pedro and Jarman, Ian H. and Etchells, Terence A. and Fonseca, José M. and Lisboa, Paulo J. G. (2010) A Clinical Decision Support System for Breast Cancer Patients. [Paper]. In: First IFIP WG 5.5/SOCOLNET Doctoral Conference on Computing, Electrical and Industrial Systems, DoCEIS 2010, February 22-24, 2010, Costa de Caparica, Portugal. URL: http://dx.doi.org/10.1007/978-3-642-11628-5_13. (ISI Web of Science).

Fernandes, Ana S. and Bacciu, Davide and Jarman, Ian H. and Etchells, Terence A. and Fonseca, José M. and Lisboa, Paulo J. G. (2010) Different Methodologies for Patient Stratification Using Survival Data. [Paper]. In: Sixth International meeting on computational intelligence methods for bioinformatics and biostatistics, 15-17 October 2009, Genoa (Italy). URL: http://dx.doi.org/10.1007/978-3-642-14571-1_21. (ISI Web of Science).

Mora, André and Fonseca, José M. and Veira, P. (2009) Retina Image Gradings’ Comparison by Weighted Matching Analysis. [Paper]. In: World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany. URL: http://dx.doi.org/10.1007/978-3-642-03891-4_79. (ISI Web of Science).

Fernandes, Ana S. and Bacciu, Davide and Jarman, Ian H. and Etchells, Terence A. and Fonseca, José M. and Lisboa, Paulo J. G. (2009) p-Health in Breast Oncology: A Framework for Predictive and Participatory e-Systems. [Paper]. In: 2009 Second International Conference on Developments in eSystems Engineering, 14-16 Dezembro 2009, Abu Dhabi (Emirados Árabes Unidos). URL: http://dx.doi.org/10.1109/DeSE.2009.68. (ISI Web of Science).

Moitinho, F. and Mora, A. and Vieira, P. and Fonseca, J. (2008) A Drusen volume quantification method based on a segmentation algorithm. [Paper]. In: VipImage 2007, 17-19 October 2007, Porto, Portugal. (ISI Web of Science).

Moitinho, F. and Mora, A. and Vieira, P. and Fonseca, J. (2007) AD3RI a Tool for Computer – Automatic Drusen Detection. [Paper]. In: CompIMAGE - Computational Modelling of Objects Represented in Images: Fundamentals, Methods and Applications, 20-21 Oct 2006, Coimbra (PT). (ISI Web of Science).

Dorotovic, I. and Fernandes, J. and Fonseca, José and Mora, André and Moreira, C. and Ribeiro, Rita (2007) COSIS: Coimbra Observatory Solar Information System. [Paper]. In: SP-CS - Astronomical Society of Pacific Conference Series, OCT 09-13, 2006, Univ Coimbra, Coimbra, PORTUGAL. (ISI Web of Science).

Dorotovic, I. and Fernandes, J. and Fonseca, José and Mora, André and Ribeiro, Rita (2007) COSIS: Coimbra Observatory Solar Information System Coimbra. [Paper]. In: Solar Physics Meeting on: The Physics of Chromospheric Plasmas. (ISI Web of Science).

Iglesias, O. and Ribeiro, Rita and Fonseca, José (2004) A fuzzy multi-agent bidding model. [Paper]. In: Proceedings of the IEEE/WIC/ACM International conference in Intelligent Agent Technologies (IAT´04), China. (ISI Web of Science).

Fonseca, José and Mora, André (2004) AN AI BASED APPROACH TO THE LEARNERS PROFILE ESTIMATION. [Paper]. In: CE2004: The 11th ISPE International Conference on Concurrent Engineering: Research and Applications, 26-30 July 2004, Pequim, R. P. China. (ISI Web of Science).

Fonseca, José and Mora, André (2004) Personal Assistant Autonomous Agents for Intelligent e-Learning Systems. [Paper]. In: 3rd IASTED International Conference on WEB-BASED EDUCATION, 16-18 Feb, Innsbruck (AUS). (ISI Web of Science).

Mora, André and Fonseca, José and Steiger-Garção, Adolfo (2003) LIBS chemical images analysis for fatigue estimation in industrial materials. [Paper]. In: ISISPA-2003 Third International Symposium on Image and Signal Processing and Analysis, 18-20 Sept 2003, Rome (IT). (ISI Web of Science).

Mora, André and Fonseca, José and Martins, J. and Steiger-Garção, Adolfo (2003) LIBS chemical images analysis for fatigue estimation in industrial materials. [Paper]. In: 8º Congresso Luso-Espanhol de Engenharia Electrotécnica, 3-5 Jul, Vilamoura. (ISI Web of Science).

Fonseca, JM and Steiger-Garcao, A. and Oliveira, E (1998) User Interface for Multi-Agent Systems: A case study. [Paper]. In: 3rd IEEE/IFIP International Conference on Information Technology for Balanced Automation Systems in Manufacturing, AUG, 1998, PRAGUE, CZECH REPUBLIC. (ISI Web of Science).

Fonseca, JM and Jurca, A and de Oliveira, E and Steiger-Garcao, A. (1997) MAGUI - A multi-agent graphical user interface. [Paper]. In: 2nd International Workshop on CSCW (Computer Support Cooperative Work) in Design, NOV 26-28, 1997, BANGKOK, THAILAND. (ISI Web of Science).

Semeano, Pedro (2010) Programa de Controlo de Acessos com Configuração de Regras em XML. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Almeida, G. and Biscaia, H. and Melício, F. and Chastre, J. and Fonseca, J. (2010) Displacement Estimation of a RC Beam Test Based on TSS Algorithm. [Paper]. In: CISTI'2010, 5ª Conferência Ibérica de Sistemas e Tecnologias de Informação, 16-19 June 2010, Santiago de Compostela, Spain.

Cordeiro, Raúl and Fonseca, José M. (2010) Euronet lab, a cloud v-lab environment. [Paper]. In: CISTI'2010,5ª Conferência Ibérica de Sistemas e Tecnologias de Informação, 16-19 June 2010, Santiago de Compostela, Spain.

Mora, André and Vieira, Pedro and Fonseca, José (2010) The Weighed Matching Analysis method and the accuracy of automated retinal image processing. [Paper]. In: IBERSENSOR 2010, 7th Ibero-American Congress on Sensors, November 9-11, 2010,, Lisbon, Portugal.

Santos, Tiago (2009) Projecto e desenvolvimento de uma aplicação de suporte à gestão de manipulação e consultas farmacêuticas. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Abreu, Abílio (2009) Detecção de incêndios nocturnos através de processamento digital de imagens. Fonseca, José and Vieira, Pedro (supervisors). Masters thesis, FCT-UNL.

Ramos, Ricardo (2009) Estudo de novas técnicas de caracterização da resposta eléctrica em (Bio)sensores (para detecção de componentes agrícolas). Fonseca, José and Raposo, M. Fátima and Ribeiro, Paulo (supervisors). Masters thesis, FCT-UNL.

Rocha, Pedro (2009) Sistema de Visão para apoio à avaliação da obstrução da orofaringe em crianças. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Mendes, João (2009) Real time mobile system for support in firefighting environments. Fonseca, José and Vieira, Pedro (supervisors). Masters thesis, FCT-UNL.

Rebelo, Teresa (2009) Desenho de um sistema de detecção automática de actividade solar para utilização on-line. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Barbosa, Bernardo (2009) Projecto e implementação de um sistema de apoio ao seguimento farmacoterapêutico. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Martins, Hélio (2009) Image Retrieval Efficiency based on selected MPEG-7 descriptors. Fonseca, José and Goes, João (supervisors). Masters thesis, FCT-UNL.

Alves, David (2009) Drum transcription from multichannel recordings with non-negative matrix factorization. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Moitinho, F. (2009) Desenvolvimento de algoritmos de agrupamento e modulação de manchas. Aplicação em imagens de retinografia. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Pereira, Ricardo (2009) Programa de monitorização para apoio a doentes domiciliados. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Alves, David and Paulus, Jouni and Fonseca, José (2009) Drum Transcription From Multichannel Recordings With Non-Negative Matrix Factorization. [Paper]. In: 17th European Signal Processing Conference (EUSIPCO 2009), August 24-28 2009, Glasgow, Scotland.

Fernandes, Ana S. and Fonseca, José M. and Jarman, Ian H. and Etchells, Terence A. and Lisboa, Paulo J.G. and Biganzoli, Elia and Bajdik, Chris (2009) Evaluation of missing data imputation in longitudinal cohort studies in breast cancer survival. International Journal of Knowledge Engineering and Soft Data Paradigms, 1 (3), p. 257. ISSN 1755-3210. eISSN 1755-3229. URL: http://dx.doi.org/10.1504/IJKESDP.2009.028818.

Farinha, Ricardo J. P. C. and Ruotsalainen, Ulla and Hirvonen, Jussi and Tuominen, Lauri and Hietala, Jarmo and Fonseca, José M. and Tohka, Jussi (2009) Segmentation of Striatal Brain Structures from High Resolution PET Images. International Journal of Biomedical Imaging, 2009, pp. 1-13. ISSN 1687-4188. eISSN 1687-4196. URL: http://dx.doi.org/10.1155/2009/156234.

Pinto, Nuno (2008) Desenvolvimento de Protótipo para Diagnóstico do Síndrome do Túnel Cárpico. Fonseca, José and Vieira, Pedro (supervisors). Masters thesis, FCT-UNL.

Moreira, Carlos (2008) Sistema Automático de Identificação e caracterização de zonas de actividade em imagens solares. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Ribeiro, Nelson (2008) Sistema sem fios para monitorização de vida em tempo real de pacientes domiciliados. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Granjo, Sara (2008) Estudo e implementação de algoritmos de classificação automática para disponibilização em portais on-line. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Ferreira, Henrique (2008) Expert Decision Support System (Sistema Pericial de Apoio à Decisão). Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Fonseca, José (2008) DRUSAS - Automation Detection of Drusens in Fundus Images. [Prototype].

Moitinho, F. and Mora, André and Vieira, Pedro and Fonseca, José (2007) IMAGE SEGMENTATION FOR DRUSEN SPOTS DETECTION AND MODELLING. [Paper]. In: CIMED2007, 25-27 July 2007, Plymouth, England.

Taktak, Azzam and Ferreira, Henrique and Granjo, Sara and Aung, M. and Dimou, Ioannis and Lisboa, Paulo and Zervakis, Michalis and Fonseca, José (2007) WEB-BASED ANALYSIS FOR THE SURVIVAL OF THE GENERAL POPULATION IN EUROPE. [Paper]. In: CIMED2007, 25-27 July, 2007, Plymouth, England.

Marques, Ana (2007) Uma Arquitectura Multi-Agente para a Portilha de Informação Médica Distrbuída. Fonseca, José (supervisor). Masters thesis, FCT-UNL.

Fonseca, José and Mora, André and Barroso, Pedro (2007) The Web and the New Generation of Medical Information Systems. In: Outcome Prediction in Cancer. Studies in Multidisciplinarity series . Elsevier, pp. 391-414. ISBN 978-0-44-452855-1. URL: http://dx.doi.org/10.1016/B978-044452855-1/50016-7.

Mora, André and Fonseca, José and Vieira, Pedro (2006) Quantification of Drusen Deposits using Image Processing Techniques. [Paper]. In: EVER-2006, 4-7 Oct 2006, Vilamoura (PT).

Grillo, M. and Lopes, David and Mora, André and Ferreira, Ana and Fonseca, José and Vieira, Pedro (2006) Software for the semi-automatic determination of the retinal vessel diameter. [Paper]. In: EVER-2006, 4-7 Oct 2006, Vilamoura (PT).

Mora, André and Fonseca, José and Vieira, Pedro (2006) Despiste automático de exsudados moles. [Paper]. In: - 1as Jornada de Anatomia, Lisboa (PT).

Mora, André and Fonseca, José and Vieira, Pedro (2006) MD3RI a Tool for Computer-Aided Drusens Contour Drawing. [Paper]. In: Proceedings of Biomed-2006, 15-17 Feb 2006, Innsbruck (AUS).

Fonseca, José and Mora, André and Barroso, Pedro (2006) The Web and the new generation of medical information systems. In: Perspectives in Outcome Prediction in Câncer. Elsevier.

Ifeachor, Emmanuel and Zervakis, Michalis and Lowe, David and Biganzoli, Elia and Fonseca, José and Van Huffel, Sabine (2005) BIOPATTERN AND BIOPROFILE ANALYSIS IN SUPPORT OF E-HEALTHCARE. [Paper]. In: Med-e-Tel 2005, 6-8 April 2005, Luxemburg.

Mora, André and Fonseca, José and Vieira, Pedro (2005) Drusen Deposits Modeling with Illumination Correction. [Paper]. In: Proc. Biomed-2005, 16-18 Feb 2005, Innsbruck (AUS).

Fonseca, José and Mora, André and Marques, Ana (2005) MAMIS – A Multi-Agent Medical Information System. [Paper]. In: Proc. Biomed-2005, 16-18 Feb 2005, Innsbruck (AUS).

Fonseca, José and Mora, André and Vieira, Pedro (2005) Detecção de Drusas em Imagens de Retinografia. [Paper]. In: JETC 05 - Jornadas de Engenharia de Electrónica Telecomunicacoes e Computadores, Lisboa (PT).

Mora, André and Vieira, Pedro and Fonseca, José (2005) Modelling of drusen deposits based on retina image tridimensional information. [Paper]. In: CIMED 2005 – Second International Conference on Computacional Intelligence in Medicine and Healthcare, 29 Jun - 1 Jul 2005, Lisbon (PT).

Marques, Ana and Mora, André and Fonseca, José (2005) A Multi-Agent Medical Information System – Um sistema multi-agente para informação médica. [Paper]. In: JETC 05 - Jornadas de Engenharia de Electrónica Telecomunicacoes e Computadores, Lisboa (PT).

Fonseca, José and Mora, André and Marques, Ana (2005) A multi-agent medical information system for Bioprofile collection - CIMED 2005. [Paper]. In: Second International Conference on Computacional Intelligence in Medicine and Healthcare, 29 June - 1 July 2005, Lisbon (PT).

Iglesias, O. and Ribeiro, Rita and Fonseca, José (2004) A Bidding Model using Fuzzy Multi-Criteria for Transportation. [Paper]. In: 15th Mini-EURO conference on Managing Uncertainty in Decision Support Models (MUDSM 2004), Coimbra (PT).

Mora, André and Vieira, Pedro and Fonseca, José (2004) Drusen Deposits on Retina Images: Detection and Modeling. [Paper]. In: Proceedings Confererência MEDSIP 2004, 3 rd International Conference on Advances in Medical Signal and Information Processing, 5-8 Sept 2004, Malta.

Barroso, Pedro and Amaral, J. and Mora, André and Fonseca, José and Steiger-Garção, Adolfo (2004) A Modelling Approach for Automatic Detection of Drusen Deposits on Retina Images. [Paper]. In: 4th European Symposium on Biomedical Engineering, 25-27 June 2004, Patras (GR).

Iglesias, O. and Ribeiro, Rita and Fonseca, José (2004) Modellling fuzzy multi-criteria negotiation in transportation. [Paper]. In: Proceedings of the 5th Workshop on Agent-Based Simulation, ABS04, 11-16 May 2004, Lisbon (PT).

Barroso, Pedro and Amaral, J. and Mora, André and Fonseca, José and Steiger-Garção, Adolfo (2004) A Quadtree Based Vehicules Recognition System. [Paper]. In: 4th International Conference on Optics, Photonics, Lasers and Imaging (ICOPLI 2004), 14-16 Jan, Kenting (TW).

Mora, André and Fonseca, José and Martins, J. and Steiger-Garção, Adolfo (2003) Análise de imagens químicas para estimação do estado de conservação em instalações industriais. [Paper]. In: 8º Congresso Luso-Espanhol de Engenharia Electrotécnica, 3-5 Jul 2003, Vilamoura (PT).

Barbosa, P. and Fonseca, José (2003) A Wireless Voting System for Large Assemblies. [Paper]. In: 8º Congresso Luso-Espanhol de Engenharia Electrotécnica, 3-5 Jul 2003, Vilamoura (PT).

Mora, André (2002) Automatização do Processo de Estimação do Estado Conservação de Materiais utilizando Expectrometria Laser. Fonseca, José (supervisor). Masters thesis, Faculdade Ciências e Tecnologia/UNL.

Cristoforetti, G. and Corsi, M. and Hidalgo, M. and Iriarte, D. and Legnaioli, S. and Palleschi, V. and Salvetti, A. and Tognoni, E. and Green, S. and Bates, D. and Steiger-Garção, Adolfo and Fonseca, José and Martins, J. and McKay, J. and Tozer, B. and Wells, D. and Wells, R. (2002) In Situ LIBS Analysis of Steel Pipes at High Temperature. [Paper]. In: 2nd international conference on LIBS, September 24 - 28, 2002, Orlando - U.S.A..

Fonseca, José (2001) Protocolos de negociação com coligações em sistemas multi-agente - Uma aplicação à gestão distribuída de recursos. PhD thesis, Universidade Nova de Lisboa.

Fonseca, José M. and Oliveira, Eugénio and Steiger-Garção, Adolfo (1997) Multi-agent negotiation algorithms for resources cost estimation: A case study. [Paper]. In: Encontro Português de Inteligência Artificial - EPIA‚97 , December 3-7, Guimarães, Portugal. URL: http://dx.doi.org/10.1007/BFb0023922.

Oliveira, Eugénio and Fonseca, José and Steiger-Garção, Adolfo (1997) Resource Selection And Cost Estimation On A Mas For Civil Construction Companies. [Paper]. In: DAIMAS’97, 15-18 June 1997, St. Petesburg, Russia.

Oliveira, Eugénio and Fonseca, José and Steiger-Garção, Adolfo (1996) Agent coalitions, negotiation and strategy adaptation. [Paper]. In: 1st Ibero-American Workshop, 25 e 26 de Outubro de 1996, Xalapa, México.

Oliveira, Eugénio and Fonseca, José M. and Steiger-Garção, Adolfo (1996) Negotiation And Resources Cost Calculation In A Mas For Civil Construction Companies. [Paper]. In: MAMAAW’97, Novembro 1996, Ronneby, Suécia.

de Oliveira, E and Fonseca, JM and SteigerGarcao, A (1996) Negotiation between economically motivated agents. [Paper]. In: 2nd IEEE/ECLA/IFIP International Conference on Architectures and Design Methods for Balanced Automation Systems, JUN, 1996, LISBON, PORTUGAL.

Fonseca, José and Correia, Luís (1996) A Real-Time Classifier for Identification of Acoustic Signatures. Computazione Evolutiva, I (2), pp. 5-13.

Fonseca, José (1994) INDUÇÃO DE ÁRVORES DE DECISÃO HistClass – Proposta de um algoritmo não paramétrico. Masters thesis, Faculdade de Ciências e Tecnologia da UNL.

Barata, Manuel and Fonseca, José and Carvalho, Manuel (1993) Princípios de Programação em PASCAL. Escola Profissional Gustave Eiffel, Lisbon.

Barata, Manuel and Fonseca, José and Steiger-Garção, Adolfo (1990) Predictive Monitoring Environment for CNC Machining. [Paper]. In: IEEE International Workshop on Intelligent Motion Control, Agosto 1990., Istambul, Turquia, .